miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|151322540|gb|EV222531.1|EV222531 GTCTACGCAGGAGGAGGGTGCAGCACGATGTTCATAGCTAAGAACCAAAATGAATCCTGTCTCTGTCCCTCATTATTTCC
CTTACCTAGTTTACATCTTGATCAAAAGTAATATATGTAGTCCAATGGATTGAACTACTCAACCACATCATCGCACTAAA
GATGGTGTGCTAGTACTTCAATAGATTGGACTACATACATTACACTTGACCAAGACATTTCTCCAACGGACAAAAAAAAA
ACAACACAAAACCAACTATTCATCCAGAGATTCTCAATAGGTTTCTTCTTAGATAAGATGGTTGCGGAATGCATGGAACA
TCTTTGGAGAGAGAAGCAGTAGGAAGGCTAGAACCGAGCCGAAGAACATCTTCATTATGTAACCGAAAGCGTCTGATGAC
TCGCTATCTTCTGAGACACCCGCACTTGGGTTCACCATAGCTTCTGCTGAAGGAAGCGACTCTATCACTGCATCAGCCAG
GTCTGTGATGAAGGATGGCGTCAGACCTAGGGCCGGAACACGCCCCCAGTTCTCTATCCCTGACTCCAAAGCTAGCTCCC
TGTACTCCATGTCTATCTCTTCAAGCGTCTCAATGTGCTCACTCACAAAACTGACTGGAACGGCTAGTAGACTCTTGACA
CCATTCTTACCAAGGTCGACAAGAACCTCATCAGTGTATGGCTTCAGCCATTGAACANGCCCAACACGACTCTGGTACGC
CAATATATGGTTGGT




Most similar to sp|P42043|HEMH1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P42043|HEMH1_ARATH Ferrochelatase-1, chloroplastic/mitochondrial
           OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1
          Length = 466

 Score =  258 bits (659), Expect = 3e-68
 Identities = 132/145 (91%), Positives = 139/145 (95%), Gaps = 1/145 (0%)
 Frame = -1

Query: 732 NHILAYQSRVGXVQWLKPYTDEVLVDLGKNGVKSLLAVPVSFVSEHIETLEEIDMEYREL 553
           +H LAYQSRVG VQWLKPYTDEVLVDLGK+GVKSLLAVPVSFVSEHIETLEEIDMEYREL
Sbjct: 321 DHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETLEEIDMEYREL 380

Query: 552 ALESGIENWGRVPALGLTPSFITDLADAVIESLPSAEAMVNPSAGV-SEDSESSDAFGYI 376
           ALESG+ENWGRVPALGLTPSFITDLADAVIESLPSAEAM NP+A V SEDSESSDAF YI
Sbjct: 381 ALESGVENWGRVPALGLTPSFITDLADAVIESLPSAEAMSNPNAVVDSEDSESSDAFSYI 440

Query: 375 MKMFFGSVLAFLLLLSPKMFHAFRN 301
           +KMFFGS+LAF+LLLSPKMFHAFRN
Sbjct: 441 VKMFFGSILAFVLLLSPKMFHAFRN 465